[关键词]
[摘要]
以大菱鲆脾脏为材料,构建cDNA文库,通过对文库克隆的序列测定和初步生物信息学分析,共获得3 656个大菱鲆脾脏表达序列标签(EST)。经与GenBank数据库的序列比对后发现,1 891个EST代表了149个已知基因,其余1 765个EST为未知序列。这149个基因大致可分为6类:9个为细胞结构类(6.0%);26个为代谢类(17.5%);45个为细胞防御/免疫类(30.2%);43个为基因/蛋白质表达类(28.9%);16个为细胞信号转导/细胞交流类(10.7%);10个无法明确分类(6.7%)。鉴定的与免疫抗病相关重要基因主要有:CC/CXC趋化因子;主要组织相容性复合体(MHC)class I α;C3补体;天然杀伤细胞增强因子(NKEF);胸腺素β-4/β-12;干扰素诱导蛋白Gig1;白介素8受体;STAT 4;热激蛋白70/90等。
[Key word]
[Abstract]
A cDNA library was constructed from turbot, Scophthalmus maximus, spleen by unidirectional cloning. A total of 3 656 ESTs from the library were sequenced and compared with sequences in the GenBank database. 1 765 clones (48.3%) appeared to be completely unknown and are likely to represent newly described genes, whereas 1 891 clones (51.7%) were identified based on matches to sequences in the database. These identified clones were derived from at least 149 genes which were categorized into six categories: 9 in cell structure/motility (6.0%), 26 in metabolism (17.5%), 45 in cell defense/immunity (30.2%), 43 in gene/protein expression (28.9%), 16 in cell signal transduction/communication (10.7%), and 10 genes lacking enough information to be classified (6.7%). Immune related cDNAs identified from the spleen were: CC/CXC chemokine, MHC class Iα, complement component C1/C3, natural killer cell enhancing factor (NKEF), thymosin beta4/ beta12, interferon inducible protein Gig1, ILB4 receptor, STAT4, and hot shock protein 70/90.
[中图分类号]
[基金项目]
国家“八六三”高技术研究发展计划(2006AA10A402);国家自然科学基金(30671623);山东省泰山学者工程专项资助