鲫血清转铁蛋白cDNA克隆及系统发育进化序列分析
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中国水产科学研究院长江水产研究所农业部淡水鱼类种质资源与生物技术重点实验室 湖北荆州 434000

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引进国际先进农业科技计划(948计划)


Cloning and sequence analysis of phylogenetic evolution of serum transferrin cDNA in Carassius auratus
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Key Laboratory of Freshwater Fish Germplasm Resources & Biotechnology Certif icated by the Ministry of Agriculture, Yangtze River Fisheries I nstitute , Chinese Academy of Fisheries Sciences , Jingz hou .. 434000, China

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    摘要:

    鱼类血清转铁蛋白是鱼类血清中一种非血红素结合铁的β-球蛋白.从GenBank数据库查询发表的鱼类转铁蛋白cDNA或基因序列,根据铁离子结合及转运功能位点,设计并合成了两对引物P1、P4以及P2、P3,克隆出鲫血清转铁蛋白cDNA中的核心片段,长度为866bp.再根据克隆出的核心片段分别设计上游及下游两对引物P5、P6以及P7、P8,随后用RACE方法分别克隆出鲫血清转铁蛋白cDNA的5'端(787bp)和3'端(1081bp)以及全长cDNA,最后在计算机上排列出鲫血清转铁蛋白全长cDNA,长度为2444bp.比较了14种鱼血清转铁蛋白cDNA序列的同源性,其同源性在30%~80%之间,结果显示鲤科鱼类(鲫、银鲫、鲤及斑马鱼等)具有很近的亲缘关系;同时进行了系统发育进化分析,证实了鱼类血清转铁蛋白进化的保守性和氨基酸序列的高度同源性.

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    Transferrin of f ish sera is a kind of non..heme ....globulin banding irons in fish sera. Transferrin has not only the property of lower oxygen tolerance but also the property of anti..diseases. Transferrin is coded by only one gene exceeding 10kb in size and it s gene has much repetition structure. The two pairs of primers P1, P4 and P2, P3 were designed and synthesized according to the banding and functional sites of irons while referring to published cDNA or gene sequences of f ish transferrins in the Database of GenBank. The reaction conditions of PCR are: fore.. denaturation, 96 .. , 4min; denaturation, 96 .. , 1min; annealing, 60 .. , 1min; extension, 72 .. , 2min; cycle number, 35; last extension, 72 .. , 10min. The pGEM..T vector system was used in cloning process. An 866bp length key segment sequence of crucian carp serum transferrin cDNA was cloned. Another two pairs of primers P5, P6 and P7, P8 were designed and synthesized according to the key segment sequence respectively. 5.. end ( 787 bp) , 3.. end ( 1081bp) and the full..length cDNA of crucian carp serum transferrin cDNA were cloned by RACE respectively. The full..length cDNA ( 2444 bp) of crucian carp serum transferrin cDNA was arranged in computer. The deduced protein sequence length is probably 807bp. The homology of cDNA sequences of 14 f ish serum transferrins was compared. Their homology is between 30% and 80%. The result shows that Cyprinidae fish ( such as Carassius auratus , C. gibelio, Cyprinus carpio, and Danio rerio ) has very close relat ive relationship. Their homology is more than 50% . At the same t ime, phylogenetic evolution was also analyzed. The evolut ional conservatism and amino acid sequence homology of fish serum transferrins were conf irmed. DNA Club, DNAman v4. 0, DNA Tool v5. 1 and BLAST v2. 0 were adopted in the process of nucleotide sequence analysis. The nucleotide sequence analysis offers even more direct evidence for the hypothesis that recent transferrin is from original transferrin banding single iron site, deriving from common ancestor of 5 .. 109 year ago and forming many branches of homology transferrins and homology analogs in different animals and different cells or tissues during a long evolutional process. Furthermore, the analogy of transferrin structure and function f rom different resources are based on the analogy of transferrin genes.

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龙华.鲫血清转铁蛋白cDNA克隆及系统发育进化序列分析[J].水产学报,2004,28(3):

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  • 收稿日期:2014-03-15
  • 最后修改日期:2014-03-15
  • 录用日期:2014-03-15
  • 在线发布日期: 2014-03-15
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