斜带石斑神经坏死病毒外壳蛋白基因克隆与序列分析
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中山大学生命科学学院广东省水生经济动物良种繁育重点实验室

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国家高技术研究发展计划(863计划)


Cloning and sequence analysis of the coat protein gene of nervous necrosis virus in Epinephelus coioides
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Key Lab of GD Improved Variety Reproduction of Aquatic Economic Animals , School of Life Sciences , Zhongshan University , Guangzhou 510275 , China

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    摘要:

    从患病毒性神经坏死病的斜带石斑鱼(Epinephelus coioids)的头部提取总RNA,根据已发表的神经坏死病毒外壳蛋白基因设计引物进行RT-PCR扩增,得到预期大小的基因片段.将此基因片段转入pET载体进行序列测定和分析,结果表明:编码斜带石斑神经坏死病毒(Orange-spotted grouper nervous necrosis virus,OGNNV)外壳蛋白基因的阅读框核苷酸数为1017bp,编码338个氨基酸;基因的核苷酸序列与野田村病毒科(Nodaviridae)的几种病毒的外壳蛋白基因序列比较结果显示,该病毒与β野田村病毒属(Betanodavirus)中的赤点石斑神经坏死病毒(red-spotted grouper nervous necrosis virus,RGNNV)的同源性最高(99%),说明该病毒株是RGNNV血清型的成员.

    Abstract:

    The nodaviridae , which include two genera : alphanodavirus and betanodavirus , are a family of small , isometric and non2enveloped RNA viruses. Alphanodaviruses primarily infect insects and betanodaviruses infect fish. Their genomes , which are among the smallest known for animal viruses , consist of two co2encapsidated positive2sense RNA segments : RNA1 encodes the RNA2dependent RNA polymerase (RdRp) which replicates the viral genomes , while RNA2 encodes a precursor to the coat protein. Based on the coat protein sequence , betanodaviruses are categorized into four different genotypes : TPNNV (tiger puffer nervous necrosis virus ) , SJNNV (stripedjack nervous necrosis virus ),BFNNV (barfinflounder nervous necrosis virus ),RGNNV (red2 spotted grouper nervous necrosis virus ) . Orange2spotted grouper ( Epinephelus coioides) nervous necrosis virus (OGNNV) is the causative agent of viral nervous necrosis (VNN) in larval and juvenal orange2spotted grouper fish. In this study , total RNA was extracted from the head of orange2spotted grouper infected with VNN. A pair of primers were designed according to the homogenus gene sequences , which have been submitted to GeneBank , from other fish nervous necrosis virus (NNV) . The forward (sense) primer contained Sac Ⅰsite and the reverse (antisense) primer contained Hind Ⅲsites. One target fragment was amplified by means of reverse2transcriptase polymerase chain reaction (RT2PCR) . After digestion with Sac Ⅰ and Hand Ⅲ, the RT2PCR products were ligated into the pET32 plasmid vector and transformed into E. coli BL21. The RT2PCR product and recombinant plasmid were sequenced , respectively. The coat protein gene of OGNNV was 1017 bases , encoded a protein of 338 amino acid with molecular mass of 37059. 88 da , and with isoelectric point (IP) of 8. 87. The sequence of the coat protein gene from OGNNV was submitted to GeneBank and the accession number was AF534998. The nucleotide sequence of the coat protein gene from OGNNV was aligned with four betanodaviruses : SJNNV , TPNNV,RGNNV,BFNNV and one alphanodavirus: BBV (Black beetle virus ). Analyses indicated that the nucleotide length of the coat protein gene from OGNNV was six bases shorter than SJNNV and TPNNV , and that the length of encoded protein was 2 aa shorter than SJNNV and TPNNV , and that the length of nucleotide sequence and encoded protein was the same as RGNNV and BFNNV. The sequence similarities between the coat at nucleotide proteingenefromOGNNVandfourfishnodaviruses of 22 % with (SJNNV,TPNNV,RGNNV,BFNNV) was 76 % ,76 % , 81.4% and 99 %, respectively. The coat protein gene from OGNNV had the highest identity of 99 % with RGNNV at nucleotide level , and had low identity BBV level . Phylogenetic comparisons of OGNNV were performed against five nodaviruses. Analyses showed that the coat protein sequence related to BBV. Neutralization epitope analysis revealed that OGNNV completely preserved in RGNNV genotype , at aa 254 -256 with RGNNV. of OGNNV was closely related to four fish nodaviruses , and was most closely related to RGNNV , but was not shared the same PDG, which was These results suggested that OGNNV belonged to RGNNV genotype , but was different from insect nodaviruses.

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陈晓艳.斜带石斑神经坏死病毒外壳蛋白基因克隆与序列分析[J].水产学报,2004,28(2):

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  • 收稿日期:2014-03-15
  • 最后修改日期:2014-03-15
  • 录用日期:2014-03-15
  • 在线发布日期: 2014-03-15
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